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English homeTools

AI research tool library

Browse tools by the research job they need to support

This English library organizes tools for researchers who need to search papers, read PDFs, manage references, write manuscripts, analyze data, and evaluate open-source research projects. Covered tools now open English decision pages; uncovered tools still link to the current full detail pages.

Library snapshot

71tools available

Use categories when you already know the tool type. Use topics when you need a workflow-first decision path.

Start from topics

I need to find papers

Start with AI literature search, PubMed query design, citation trails, and novelty checks.

I need to read PDFs faster

Compare translation, AI reading, annotation, summary, and Zotero-based reading workflows.

I need to write or revise a paper

Use structure-first methods, reporting checklists, citation review, and careful AI polishing.

I need reproducible analysis

Look for statistics, bioinformatics, imaging, visualization, and open-source automation tools.

Other tools tools

Each card keeps the decision lightweight: what the tool is called, which research job it supports, and where to inspect either the English decision page or the current full detail page.

All (71)Other tools (71)

allenai/scispacy

Useful research tools that do not fit a single narrow category.

View English workflow page

Covidence

Useful research tools that do not fit a single narrow category.

View English workflow page

RobotReviewer

Useful research tools that do not fit a single narrow category.

View English workflow page

Connected Papers

A citation graph tool for understanding nearby papers, influential prior work, and connected research clusters.

View English decision page

DeepL Translator

Useful research tools that do not fit a single narrow category.

View English workflow page

Obsidian

Useful research tools that do not fit a single narrow category.

View English workflow page

nextflow-io/nextflow

Useful research tools that do not fit a single narrow category.

View English workflow page

MLflow

Useful research tools that do not fit a single narrow category.

View English workflow page

DeepLabCut

Useful research tools that do not fit a single narrow category.

View English workflow page

Iris.ai

Useful research tools that do not fit a single narrow category.

View English workflow page

deepmind/alphafold

Useful research tools that do not fit a single narrow category.

View English workflow page

scikit-learn

Useful research tools that do not fit a single narrow category.

View English workflow page

quarto-dev/quarto-cli

Useful research tools that do not fit a single narrow category.

View English workflow page

SciSpace (formerly Typeset.io)

Useful research tools that do not fit a single narrow category.

View English workflow page

KNIME Analytics Platform

Useful research tools that do not fit a single narrow category.

View English workflow page

Litmaps

Useful research tools that do not fit a single narrow category.

View English workflow page

ASReview LAB

Useful research tools that do not fit a single narrow category.

View English workflow page

ResearchRabbit

A visual literature discovery tool for expanding from seed papers into related papers, authors, and citation networks.

View English decision page

MIC-DKFZ/nnUNet

Useful research tools that do not fit a single narrow category.

View English workflow page

qwwzdyj/AIA-Academic-Illustrator-

Useful research tools that do not fit a single narrow category.

View English workflow page

NVIDIA/bionemo-framework

Useful research tools that do not fit a single narrow category.

View English workflow page

ChaokunHong/MetaScreener

Useful research tools that do not fit a single narrow category.

View English workflow page

QJHWC/PaperForge

Useful research tools that do not fit a single narrow category.

View English workflow page

shenwei356/csvtk

Useful research tools that do not fit a single narrow category.

View English workflow page

bahayonghang/academic-writing-skills

Useful research tools that do not fit a single narrow category.

View English workflow page

evanpeikon/Bioinformatics_Toolkit

Useful research tools that do not fit a single narrow category.

View English workflow page

Future-House/paper-qa

Useful research tools that do not fit a single narrow category.

View English workflow page

yunshenwuchuxun/latex-paper-skills

Useful research tools that do not fit a single narrow category.

View English workflow page

bgauryy/octocode-mcp

Useful research tools that do not fit a single narrow category.

View English workflow page

xjtulyc/MedgeClaw

Useful research tools that do not fit a single narrow category.

View English workflow page

jaechang-hits/SciAgent-Skills

Useful research tools that do not fit a single narrow category.

View English workflow page

torognes/vsearch

Useful research tools that do not fit a single narrow category.

View English workflow page

google/deepvariant

Useful research tools that do not fit a single narrow category.

View English workflow page

broadinstitute/seqr

Useful research tools that do not fit a single narrow category.

View English workflow page

exomiser/Exomiser

Useful research tools that do not fit a single narrow category.

View English workflow page

VikParuchuri/marker

Useful research tools that do not fit a single narrow category.

View English workflow page

OpenPrism

An academic writing workspace to evaluate for structure, source handling, revision workflows, and research writing support.

View English decision page

shenwei356/seqkit

Useful research tools that do not fit a single narrow category.

View English workflow page

Elicit

A literature discovery and evidence extraction tool for turning research questions into candidate papers and structured evidence tables.

View English decision page

Elicit.org

Useful research tools that do not fit a single narrow category.

View English workflow page

PaperPal

Useful research tools that do not fit a single narrow category.

View English workflow page

Perplexity

A web research assistant that can help with quick exploration, but academic use requires source and citation verification.

View English decision page

QuillBot

Useful research tools that do not fit a single narrow category.

View English workflow page

Grammarly

Useful research tools that do not fit a single narrow category.

View English workflow page

delibae/claude-prism

Useful research tools that do not fit a single narrow category.

View English workflow page

delibae/claude-prism

Useful research tools that do not fit a single narrow category.

View English workflow page

Deep Research for academic workflows

A workflow pattern for using AI to gather, organize, and synthesize research material while preserving source checks.

View English decision page

Gaius-Augustus/BRAKER

Useful research tools that do not fit a single narrow category.

View English workflow page

HughYau/AcademicForge

Useful research tools that do not fit a single narrow category.

View English workflow page

bahayonghang/academic-writing-skills

Useful research tools that do not fit a single narrow category.

View English workflow page

Galaxy Project

Useful research tools that do not fit a single narrow category.

View English workflow page

shenwei356/rush

Useful research tools that do not fit a single narrow category.

View English workflow page

blazickjp/arxiv-mcp-server

Useful research tools that do not fit a single narrow category.

View English workflow page

ai-boost/awesome-ai-for-science

Useful research tools that do not fit a single narrow category.

View English workflow page

SciSpace Copilot

An AI paper reading assistant for asking questions about PDFs, clarifying terms, and navigating dense scientific text.

View English decision page

scverse/scanpy

Useful research tools that do not fit a single narrow category.

View English workflow page

jupyterhub/jupyterhub

Useful research tools that do not fit a single narrow category.

View English workflow page

PDFMathTranslate/PDFMathTranslate

Useful research tools that do not fit a single narrow category.

View English workflow page

Graylab/DL4Proteins-notebooks

Useful research tools that do not fit a single narrow category.

View English workflow page

sqjin/CellChat

Useful research tools that do not fit a single narrow category.

View English workflow page

Slicer/Slicer

Useful research tools that do not fit a single narrow category.

View English workflow page

Scite

A citation context tool that helps researchers inspect whether papers support, mention, or contrast with a claim.

View English decision page

H2O.ai (Open Source Components)

Useful research tools that do not fit a single narrow category.

View English workflow page

Rayyan

Useful research tools that do not fit a single narrow category.

View English workflow page

sokrypton/ColabFold

Useful research tools that do not fit a single narrow category.

View English workflow page

Zotero

An open-source reference manager for collecting papers, managing citations, organizing notes, and supporting long-term research libraries.

View English decision page

Project-MONAI/MONAI

Useful research tools that do not fit a single narrow category.

View English workflow page

ChatGPT / GPT-4

Useful research tools that do not fit a single narrow category.

View English workflow page

DeepL Write

Useful research tools that do not fit a single narrow category.

View English workflow page

Humata AI

Useful research tools that do not fit a single narrow category.

View English workflow page

satijalab/seurat

Useful research tools that do not fit a single narrow category.

View English workflow page

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