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AI research tool library

Browse tools by the research job they need to support

This English library organizes tools for researchers who need to search papers, read PDFs, manage references, write manuscripts, analyze data, and evaluate open-source research projects. Covered tools now open English decision pages; uncovered tools still link to the current full detail pages.

Library snapshot
71tools available

Use categories when you already know the tool type. Use topics when you need a workflow-first decision path.

Start from topics

I need to find papers

Start with AI literature search, PubMed query design, citation trails, and novelty checks.

I need to read PDFs faster

Compare translation, AI reading, annotation, summary, and Zotero-based reading workflows.

I need to write or revise a paper

Use structure-first methods, reporting checklists, citation review, and careful AI polishing.

I need reproducible analysis

Look for statistics, bioinformatics, imaging, visualization, and open-source automation tools.

Other tools tools

Each card keeps the decision lightweight: what the tool is called, which research job it supports, and where to inspect either the English decision page or the current full detail page.

All (71)Other tools (71)
Other tools

google/deepvariant

Useful research tools that do not fit a single narrow category.

View English workflow page
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Agent2Research

Practical AI tool intelligence, research workflows, and method guides for medical and academic researchers.

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BioRender

Useful research tools that do not fit a single narrow category.

View English workflow page
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MONAI

Useful research tools that do not fit a single narrow category.

View English workflow page
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Slicer/Slicer

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

Covidence

Useful research tools that do not fit a single narrow category.

View English workflow page
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scikit-learn

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

CellChat

Useful research tools that do not fit a single narrow category.

View English workflow page
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evanpeikon/Bioinformatics_Toolkit

Useful research tools that do not fit a single narrow category.

View English workflow page
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torognes/vsearch

Useful research tools that do not fit a single narrow category.

View English workflow page
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OpenPrism

An academic writing workspace to evaluate for structure, source handling, revision workflows, and research writing support.

View English decision page
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DeepLabCut

Useful research tools that do not fit a single narrow category.

View English workflow page
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ColabFold

Useful research tools that do not fit a single narrow category.

View English workflow page
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Scite

A citation context tool that helps researchers inspect whether papers support, mention, or contrast with a claim.

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allenai/scispacy

Useful research tools that do not fit a single narrow category.

View English workflow page
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Gaius-Augustus/BRAKER

Useful research tools that do not fit a single narrow category.

View English workflow page
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Rayyan

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

Litmaps

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

Future-House/paper-qa

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

PDFMathTranslate/PDFMathTranslate

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

Consensus

A research question answering tool that surfaces scientific papers and concise evidence-oriented summaries.

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ASReview LAB

Useful research tools that do not fit a single narrow category.

View English workflow page
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quarto-dev/quarto-cli

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

DeepL Translator

Useful research tools that do not fit a single narrow category.

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Connected Papers

A citation graph tool for understanding nearby papers, influential prior work, and connected research clusters.

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Other tools

ResearchRabbit

A visual literature discovery tool for expanding from seed papers into related papers, authors, and citation networks.

View English decision page
Other tools

broadinstitute/seqr

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

MLflow

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

Iris.ai

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

yunshenwuchuxun/latex-paper-skills

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

Zotero

An open-source reference manager for collecting papers, managing citations, organizing notes, and supporting long-term research libraries.

View English decision page
Other tools

bahayonghang/academic-writing-skills

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

bgauryy/octocode-mcp

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

blazickjp/arxiv-mcp-server

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

NVIDIA/bionemo-framework

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

xjtulyc/MedgeClaw

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

jaechang-hits/SciAgent-Skills

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

exomiser/Exomiser

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

VikParuchuri/marker

Useful research tools that do not fit a single narrow category.

View English workflow page
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Grammarly

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

Semantic Scholar

A free scholarly search engine useful for citation trails, related papers, author discovery, and fast literature mapping.

View English decision page
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Obsidian

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

ChatGPT / GPT-4

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

DeepL Write

Useful research tools that do not fit a single narrow category.

View English workflow page
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shenwei356/rush

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

Deep Research for academic workflows

A workflow pattern for using AI to gather, organize, and synthesize research material while preserving source checks.

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SciSpace (formerly Typeset.io)

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

scverse/scanpy

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

shenwei356/seqkit

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

HughYau/AcademicForge

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

delibae/claude-prism

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

shenwei356/csvtk

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

delibae/claude-prism

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

QJHWC/PaperForge

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

KNIME Analytics Platform

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

bahayonghang/academic-writing-skills

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

ChaokunHong/MetaScreener

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

Graylab/DL4Proteins-notebooks

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

RobotReviewer

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

Perplexity

A web research assistant that can help with quick exploration, but academic use requires source and citation verification.

View English decision page
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QuillBot

Useful research tools that do not fit a single narrow category.

View English workflow page
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jupyterhub/jupyterhub

Useful research tools that do not fit a single narrow category.

View English workflow page
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PaperPal

Useful research tools that do not fit a single narrow category.

View English workflow page
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Humata AI

Useful research tools that do not fit a single narrow category.

View English workflow page
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MIC-DKFZ/nnUNet

Useful research tools that do not fit a single narrow category.

View English workflow page
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Galaxy Project

Useful research tools that do not fit a single narrow category.

View English workflow page
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qwwzdyj/AIA-Academic-Illustrator-

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

Elicit.org

Useful research tools that do not fit a single narrow category.

View English workflow page
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satijalab/seurat

Useful research tools that do not fit a single narrow category.

View English workflow page
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ai-boost/awesome-ai-for-science

Useful research tools that do not fit a single narrow category.

View English workflow page
Other tools

Elicit

A literature discovery and evidence extraction tool for turning research questions into candidate papers and structured evidence tables.

View English decision page
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H2O.ai (Open Source Components)

Useful research tools that do not fit a single narrow category.

View English workflow page
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